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LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817672, updated on 18-Sep-2024

Summary

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Official Symbol
LSH3
Official Full Name
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Primary source
TAIR:AT2G31160
Locus tag
AT2G31160
See related
Araport:AT2G31160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LIGHT SENSITIVE HYPOCOTYLS 3; OBO1; ORGAN BOUNDARY 1; T16B12.3; T16B12_3
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Genomic context

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See LSH3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (13277710..13279498)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene uncharacterized protein Neighboring gene ATP binding / ATPase Neighboring gene Cysteinyl-tRNA synthetase, class Ia family protein Neighboring gene myb domain protein 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Organ boundary1 defines a gene expressed at the junction between the shoot apical meristem and lateral organs. Cho E, et al. Proc Natl Acad Sci U S A, 2011 Feb 1. PMID 21245300, Free PMC Article
  2. CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells. Takeda S, et al. Plant J, 2011 Jun. PMID 21435050
  3. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CUC1 directly activates transcription of the nuclear factor genes LSH4 and LSH3, which may suppress organ differentiation in the boundary region.
    Title: CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128672.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in maintenance of shoot apical meristem identity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in organ boundary specification between lateral organs and the meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in petal development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in post-embryonic plant morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in specification of petal number IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
NP_565716.1
  • LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13277710..13279498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128672.2 → NP_565716.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565716.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82268
    UniProtKB/TrEMBL
    A0A178W2L5, A0A5S9X2T7, A0A654F2V2
    Conserved Domains (1) summary
    pfam04852
    Location:54 → 167
    DUF640; Protein of unknown function (DUF640)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82268.1

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