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TBL43 TRICHOME BIREFRINGENCE-LIKE 43 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817640, updated on 18-Sep-2024

Summary

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Official Symbol
TBL43
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 43
Primary source
TAIR:AT2G30900
Locus tag
AT2G30900
See related
Araport:AT2G30900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7F1.11; F7F1_11; TRICHOME BIREFRINGENCE-LIKE 43
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL43 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (13149414..13152542)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase PHI 9 Neighboring gene glutathione S-transferase PHI 10 Neighboring gene Pleckstrin homology (PH) domain-containing protein Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family Neighboring gene actin-related protein C1A Neighboring gene coenzyme Q 3 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acetylation of homogalacturonan and rhamnogalacturonan-I is catalyzed by a suite of trichome birefringence-like proteins. Zhong R, et al. Plant J, 2024 Feb. PMID 37934816
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336306.1
NM_128642.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables O-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 43
NP_180647.2
  • TRICHOME BIREFRINGENCE-LIKE 43 (TBL43); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 42 (TAIR:AT1G78710.1); Has 1340 Blast hits to 1315 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13149414..13152542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128642.2 → NP_180647.2  TRICHOME BIREFRINGENCE-LIKE 43 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180647.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80855, Q6DR10, Q84N42, Q84N43
    UniProtKB/TrEMBL
    A0A178VN54, A0AAF0XYY7
    Conserved Domains (2) summary
    pfam13839
    Location:95 → 367
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:43 → 94
    PMR5N; PMR5 N terminal Domain

  2. NM_001336306.1 → NP_001324916.1  TRICHOME BIREFRINGENCE-LIKE 43 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1K5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DR10.1

Gene LinkOut

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