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LBD13 LOB domain-containing protein 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817584, updated on 18-Sep-2024

Summary

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Official Symbol
LBD13
Official Full Name
LOB domain-containing protein 13
Primary source
TAIR:AT2G30340
Locus tag
AT2G30340
See related
Araport:AT2G30340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LOB domain-containing protein 13; T9D9.15; T9D9_15
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Genomic context

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See LBD13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (12931172..12932828, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pseudouridine synthase family protein Neighboring gene GCN5L1 family protein Neighboring gene Excinuclease ABC, C subunit, N-terminal Neighboring gene ncRNA Neighboring gene SOS3-interacting protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LBD13 positively regulates lateral root formation in Arabidopsis. Cho C, et al. Planta, 2019 Apr. PMID 30627888
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. positively regulates lateral root formation
    Title: LBD13 positively regulates lateral root formation in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336251.1
NM_179810.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lateral root formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOB domain-containing protein 13
NP_850141.1
  • LOB domain-containing protein 13 (LBD13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 15 (TAIR:AT2G40470.1); Has 7621 Blast hits to 4763 proteins in 393 species: Archae - 10; Bacteria - 557; Metazoa - 1967; Fungi - 731; Plants - 2819; Viruses - 582; Other Eukaryotes - 955 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12931172..12932828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179810.3 → NP_850141.1  LOB domain-containing protein 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850141.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG64, O22930, Q147P1, Q8W1D8, Q9AT61
    UniProtKB/TrEMBL
    A0A178VTE1
    Conserved Domains (1) summary
    pfam03195
    Location:52 → 149
    LOB; Lateral organ boundaries (LOB) domain

  2. NM_001336251.1 → NP_001323878.1  LOB domain-containing protein 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRU4, A0A1P8AYC6, A0A384LQ09
    Conserved Domains (1) summary
    pfam03195
    Location:53 → 150
    LOB; Lateral organ boundaries (LOB) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9AT61.2

Gene LinkOut

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