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Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817547, updated on 18-Sep-2024

Summary

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Official Full Name
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT2G29970
Locus tag
AT2G29970
See related
Araport:AT2G29970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23F1.11; F23F1_11; SMAX1-like 7; SMXL7
Summary
Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (12776208..12780069)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ELF4-like 1 Neighboring gene cyclophilin 5 Neighboring gene ncRNA Neighboring gene fatty acid desaturase 3 Neighboring gene alternative NAD(P)H dehydrogenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SMAX1-LIKE7 Signals from the Nucleus to Regulate Shoot Development in Arabidopsis via Partially EAR Motif-Independent Mechanisms. Liang Y, et al. Plant Cell, 2016 Jul. PMID 27317673, Free PMC Article
  2. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis. Li W, et al. Biomolecules, 2020 Apr 14. PMID 32295207, Free PMC Article
  3. SUPPRESSOR OF MAX2 LIKE 6, 7, and 8 Interact with DDB1 BINDING WD REPEAT DOMAIN HYPERSENSITIVE TO ABA DEFICIENT 1 to Regulate the Drought Tolerance and Target SUCROSE NONFERMENTING 1 RELATED PROTEIN KINASE 2.3 to Abscisic Acid Response in Arabidopsis. Lian Y, et al. Biomolecules, 2023 Sep 18. PMID 37759806, Free PMC Article
  4. Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Wang L, et al. Plant Cell, 2015 Nov. PMID 26546446, Free PMC Article
  5. SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis. Soundappan I, et al. Plant Cell, 2015 Nov. PMID 26546447, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
    Title: Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
  2. SMXL7 contains a well-conserved EAR (ETHYLENE-RESPONSE FACTOR Amphiphilic Repression) motif, which contributes to, but is not essential for, SMXL7 functionality. Intriguingly, different developmental processes show differential sensitivity to the loss of the EAR motif, raising the possibility that there may be several distinct mechanisms at play downstream of SMXL7.
    Title: SMAX1-LIKE7 Signals from the Nucleus to Regulate Shoot Development in Arabidopsis via Partially EAR Motif-Independent Mechanisms.
  3. In Arabidopsis, D53-like SMXLs act with TPR2 to repress transcription and so allow lateral bud outgrowth but that strigolactone-induced degradation of D53-like proteins activates transcription to inhibit outgrowth. [SMLX7]
    Title: Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.
  4. Data suggests that SMAX1 and SMXL6,7,8 repress karrikin and strigolactone signaling, respectively, and that all MAX2-dependent growth effects are mediated by degradation of SMAX1/SMXL proteins.[SMXL7]
    Title: SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_128551.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
NP_565689.1
  • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G07200.2); Has 10913 Blast hits to 10488 proteins in 2533 species: Archae - 15; Bacteria - 9122; Metazoa - 6; Fungi - 149; Plants - 525; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12776208..12780069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128551.4 → NP_565689.1  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565689.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80875, Q94BS5
    UniProtKB/TrEMBL
    A0A178W0G9, A0A5S9X315
    Conserved Domains (2) summary
    cd19499
    Location:627 → 784
    RecA-like_ClpB_Hsp104-like; Chaperone protein ClpB/Hsp104 subfamily
    NF033607
    Location:230 → 782
    disagg_AAA_ClpG; AAA family protein disaggregase ClpG
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80875.1

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