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Thioesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817508, updated on 18-Sep-2024

Summary

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Official Full Name
Thioesterase superfamily protein
Primary source
TAIR:AT2G29590
Locus tag
AT2G29590
See related
Araport:AT2G29590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16P2.3; F16P2_3
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (12654456..12655457, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cytosolic enolase Neighboring gene proliferating cell nuclear antigen 2 Neighboring gene CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Plant protein 1589 of unknown function Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Reumann S, et al. Plant Physiol, 2009 May. PMID 19329564, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128512.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Thioesterase superfamily protein
NP_565683.1
  • Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G04290.1); Has 283 Blast hits to 282 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 21; Plants - 166; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12654456..12655457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128512.4 → NP_565683.1  Thioesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565683.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0M1, A0A7G2EE05, Q8LAE6, Q9ZW37
    Conserved Domains (1) summary
    cd03443
    Location:42 → 151
    PaaI_thioesterase; PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not ...
Nucleotide Protein
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