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XBAT31 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817433, updated on 18-Sep-2024

Summary

Official Symbol
XBAT31
Official Full Name
uncharacterized protein
Primary source
TAIR:AT2G28840
Locus tag
AT2G28840
See related
Araport:AT2G28840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8N16.13; F8N16_13; XB3 ortholog 1 in Arabidopsis thaliana
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Genomic context

See XBAT31 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (12378272..12380809)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L16 Neighboring gene armadillo/beta-catenin repeat protein Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 3 Neighboring gene cytochrome P450, family 710, subfamily A, polypeptide 4

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001124934.1
NM_128443.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within response to heat IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
uncharacterized protein
NP_001118406.1
  • XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_180450.2
  • XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12378272..12380809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128443.4NP_180450.2  uncharacterized protein AT2G28840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180450.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56W24, Q944L4, Q94B55, Q9ZV30
    UniProtKB/TrEMBL
    A0A178VZ27, A0A5S9X2F1
    Conserved Domains (4) summary
    COG0666
    Location:149292
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:78109
    ANK; ANK repeat [structural motif]
    cd16516
    Location:318368
    RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
    pfam12796
    Location:83181
    Ank_2; Ankyrin repeats (3 copies)
  2. NM_001124934.1NP_001118406.1  uncharacterized protein AT2G28840 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118406.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X2F1, F4IJM9
    Conserved Domains (5) summary
    cd00204
    Location:59201
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:103211
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:67119
    Ank_4; Ankyrin repeats (many copies)
    pfam13920
    Location:303357
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    sd00045
    Location:6498
    ANK; ANK repeat [structural motif]