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Pathogenesis-related thaumatin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817428, updated on 18-Sep-2024

Summary

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Official Full Name
Pathogenesis-related thaumatin superfamily protein
Primary source
TAIR:AT2G28790
Locus tag
AT2G28790
See related
Araport:AT2G28790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8N16.8; F8N16_8
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (12354329..12355570, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-hydroxybenzoic acid efflux pump subunit Neighboring gene ncRNA Neighboring gene 63 kDa inner membrane family protein Neighboring gene Dof-type zinc finger DNA-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128438.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
Pathogenesis-related thaumatin superfamily protein
NP_180445.1
  • Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1542 Blast hits to 1521 proteins in 166 species: Archae - 0; Bacteria - 19; Metazoa - 54; Fungi - 86; Plants - 1377; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12354329..12355570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336188.1 → NP_001324474.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B068, A0A654EY76, Q8LDH6
    Conserved Domains (1) summary
    cd09218
    Location:54 → 273
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs

  2. NM_128438.3 → NP_180445.1  Pathogenesis-related thaumatin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180445.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVA0, A0A654EY76, Q8GZT2, Q8LDH6, Q9ZV34
    Conserved Domains (1) summary
    cd09218
    Location:29 → 248
    TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs
Nucleotide Protein
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