U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RAP2.7 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817403, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
RAP2.7
Official Full Name
uncharacterized protein
Primary source
TAIR:AT2G28550
Locus tag
AT2G28550
See related
Araport:AT2G28550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
related to AP2.7; T17D12.11; T17D12_11; TARGET OF EARLY ACTIVATION TAGGED (EAT) 1; TOE1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RAP2.7 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (12225656..12228624, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vacuolar proton ATPase A1 Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene DNA repair (Rad51) family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana. Díaz-Manzano FE, et al. New Phytol, 2018 Jan. PMID 29105090, Free PMC Article
  2. MiR172b-TOE1/2 module regulates plant innate immunity in an age-dependent manner. Zou Y, et al. Biochem Biophys Res Commun, 2020 Oct 22. PMID 32807500
  3. Photoexcited Cryptochrome2 Interacts Directly with TOE1 and TOE2 in Flowering Regulation. Du SS, et al. Plant Physiol, 2020 Sep. PMID 32661061, Free PMC Article
  4. The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis. Jung JH, et al. Plant Cell, 2007 Sep. PMID 17890372, Free PMC Article
  5. The suppression of WRKY44 by GIGANTEA-miR172 pathway is involved in drought response of Arabidopsis thaliana. Han Y, et al. PLoS One, 2013. PMID 24223111, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The results showed that the regulatory module miRNA172/TOE1/FT plays an important role in correct giant cells and gall development, where miRNA172 is modulated by auxins.
    Title: A role for the gene regulatory module microRNA172/TARGET OF EARLY ACTIVATION TAGGED 1/FLOWERING LOCUS T (miRNA172/TOE1/FT) in the feeding sites induced by Meloidogyne javanica in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001202696.2
NM_001336168.1
NM_001336169.1
NM_001336170.1
NM_001336171.1
NM_128415.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding TAS
Traceable Author Statement
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription corepressor binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of gene expression IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of innate immune response IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within plant organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein
NP_001189625.1
  • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1).
NP_001318304.1
  • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001323945.1
  • related to AP2.7
NP_001323946.1
  • related to AP2.7
NP_001323947.1
  • related to AP2.7
NP_565674.1
  • related to AP2.7 (RAP2.7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: target of early activation tagged (EAT) 2 (TAIR:AT5G60120.1); Has 4895 Blast hits to 4529 proteins in 234 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 4802; Viruses - 9; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12225656..12228624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128415.5 → NP_565674.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565674.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23109, Q3E7W2, Q9C5R2, Q9SK03
    UniProtKB/TrEMBL
    A0A5S9X233, A0A654EX04, A0A7G2EFT9
    Conserved Domains (2) summary
    smart00380
    Location:153 → 215
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    cl00033
    Location:245 → 293
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  2. NM_001202696.2 → NP_001189625.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189625.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EFT9, F4IIR3
    Conserved Domains (1) summary
    smart00380
    Location:245 → 308
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

  3. NM_001336169.1 → NP_001323947.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYL0

  4. NM_001336168.1 → NP_001318304.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYJ5

  5. NM_001336170.1 → NP_001323946.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRW6, A0A1P8AYM1

  6. NM_001336171.1 → NP_001323945.1  uncharacterized protein AT2G28550 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYJ5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SK03.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.