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LOG1 Putative lysine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817376, updated on 18-Sep-2024

Summary

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Official Symbol
LOG1
Official Full Name
Putative lysine decarboxylase family protein
Primary source
TAIR:AT2G28305
Locus tag
AT2G28305
See related
Araport:AT2G28305
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATLOG1; LONELY GUY 1; T1B3.18
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Genomic context

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See LOG1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (12081023..12084678)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene trimethylguanosine synthase (DUF707) Neighboring gene Nucleotide/sugar transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Direct control of shoot meristem activity by a cytokinin-activating enzyme. Kurakawa T, et al. Nature, 2007 Feb 8. PMID 17287810
  2. Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Kuroha T, et al. Plant Cell, 2009 Oct. PMID 19837870, Free PMC Article
  3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Results strongly suggest that the direct activation pathway via LOGs plays a pivotal role in regulating cytokinin activity during normal growth and development in Arabidopsis.
    Title: Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336161.1
NM_001336162.1
NM_128389.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cytokinin riboside 5'-monophosphate phosphoribohydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Putative lysine decarboxylase family protein
NP_565668.1
  • LONELY GUY 1 (LOG1); CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5303 Blast hits to 5301 proteins in 1556 species: Archae - 26; Bacteria - 3660; Metazoa - 10; Fungi - 132; Plants - 396; Viruses - 0; Other Eukaryotes - 1079 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12081023..12084678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128389.3 → NP_565668.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565668.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RUN2, Q9ASW6
    UniProtKB/TrEMBL
    A0A178VS96, A0A178VZF1, A0A5S9X293
    Conserved Domains (1) summary
    cl22881
    Location:8 → 185
    DNA_processg_A; DNA recombination-mediator protein A

  2. NM_001336161.1 → NP_001325076.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B221

  3. NM_001336162.1 → NP_001325075.1  Putative lysine decarboxylase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZF1, A0A1P8B218
    Conserved Domains (1) summary
    cl22881
    Location:8 → 183
    DNA_processg_A; DNA recombination-mediator protein A
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RUN2.1

Gene LinkOut

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