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NCRK Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817371, updated on 18-Sep-2024

Summary

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Official Symbol
NCRK
Official Full Name
Protein kinase superfamily protein
Primary source
TAIR:AT2G28250
Locus tag
AT2G28250
See related
Araport:AT2G28250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3B23.8; T3B23_8
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Genomic context

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See NCRK in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (12042348..12046616)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex Neighboring gene ATP-dependent helicase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cyclic nucleotide-gated channel 15 Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cysteine-rich receptor-like kinase NCRK and a pathogen-induced protein kinase RBK1 are Rop GTPase interactors. Molendijk AJ, et al. Plant J, 2008 Mar. PMID 18088316
  2. An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. Oikawa A, et al. PLoS One, 2010 Nov 23. PMID 21124849, Free PMC Article
  3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036358.2
NM_001336154.1
NM_001336155.1
NM_001336156.1
NM_179784.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within xylem development IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Protein kinase superfamily protein
NP_001031435.1
  • NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_850115.1
  • NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12042348..12046616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336153.1 → NP_001323735.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  2. NM_001036358.2 → NP_001031435.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031435.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  3. NM_001336154.1 → NP_001323736.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  4. NM_179784.2 → NP_850115.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850115.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  5. NM_001336155.1 → NP_001323737.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  6. NM_001336156.1 → NP_001323738.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WWT1, Q8VYY5, Q9SL30
    UniProtKB/TrEMBL
    A0A178VW29, A0A5S9X272, A0A7G2E9M3
    Conserved Domains (1) summary
    cd14066
    Location:216 → 492
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYY5.1

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