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aspartic proteinase CDR1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817368, updated on 18-Sep-2024

Summary

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Official Full Name
aspartic proteinase CDR1-like protein
Primary source
TAIR:AT2G28220
Locus tag
AT2G28220
See related
Araport:AT2G28220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T3B23.11; T3B23_11
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (12033998..12035327)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene alpha carbonic anhydrase 2 Neighboring gene aspartic proteinase CDR1-like protein Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
aspartic proteinase CDR1-like protein
NP_180389.2
  • Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G28030.1); Has 5645 Blast hits to 3283 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 1260; Fungi - 835; Plants - 3308; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12033998..12035327
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128382.2 → NP_180389.2  aspartic proteinase CDR1-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X1X8, A0A654F1Z1, F4IHR5
    Conserved Domains (1) summary
    PLN03146
    Location:12 → 398
    PLN03146; aspartyl protease family protein; Provisional
Nucleotide Protein
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