U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Transcription factor IIS family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817325, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Transcription factor IIS family protein
Primary source
TAIR:AT2G27780
Locus tag
AT2G27780
See related
Araport:AT2G27780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15K20.12; F15K20_12
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (11845472..11846578, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DUF868 family protein (DUF868) Neighboring gene PPR containing protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Transcription factor IIS family protein
NP_180346.1
  • Transcription factor IIS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription factor IIS family protein (TAIR:AT5G27310.1); Has 599 Blast hits to 512 proteins in 114 species: Archae - 2; Bacteria - 74; Metazoa - 115; Fungi - 24; Plants - 110; Viruses - 2; Other Eukaryotes - 272 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11845472..11846578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128338.1 → NP_180346.1  Transcription factor IIS family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180346.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F7G4, Q9ZUX9
    Conserved Domains (1) summary
    smart00509
    Location:21 → 95
    TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools