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IPT2 tRNAisopentenyltransferase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817322, updated on 18-Sep-2024

Summary

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Official Symbol
IPT2
Official Full Name
tRNAisopentenyltransferase 2
Primary source
TAIR:AT2G27760
Locus tag
AT2G27760
See related
Araport:AT2G27760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATIPT2; IPPT; tRNAisopentenyltransferase 2
Summary
Encodes tRNA isopentenyltransferase, similar to yeast MOD5.
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Genomic context

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See IPT2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (11824772..11827609)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RAB6-interacting golgin (DUF662) Neighboring gene Surfeit locus protein 6 Neighboring gene ncRNA Neighboring gene DUF868 family protein (DUF868)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a tRNA isopentenyltransferase gene from Arabidopsis thaliana. Golovko A, et al. Plant Mol Biol, 2002 May. PMID 11999372
  2. Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana. Takei K, et al. J Biol Chem, 2001 Jul 13. PMID 11313355
  3. Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis. Kasahara H, et al. J Biol Chem, 2004 Apr 2. PMID 14726522
  4. Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Miyawaki K, et al. Proc Natl Acad Sci U S A, 2006 Oct 31. PMID 17062755, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_128335.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables AMP dimethylallyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables tRNA dimethylallyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA dimethylallyltransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cytokinin biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tRNAisopentenyltransferase 2
NP_565658.1
  • tRNAisopentenyltransferase 2 (IPT2); CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 8447 Blast hits to 8274 proteins in 2665 species: Archae - 0; Bacteria - 5426; Metazoa - 146; Fungi - 137; Plants - 431; Viruses - 0; Other Eukaryotes - 2307 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11824772..11827609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128335.2 → NP_565658.1  tRNAisopentenyltransferase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565658.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RXJ9, Q9SQ59, Q9ZUX7
    UniProtKB/TrEMBL
    A0A5S9X1T0
    Conserved Domains (2) summary
    PLN02748
    Location:1 → 464
    PLN02748; tRNA dimethylallyltransferase
    cl21455
    Location:25 → 338
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUX7.2

Gene LinkOut

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