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60S acidic ribosomal protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817318, updated on 18-Sep-2024

Summary

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Official Full Name
60S acidic ribosomal protein family
Primary source
TAIR:AT2G27720
Locus tag
AT2G27720
See related
Araport:AT2G27720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15K20.18; F15K20_18
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (11818230..11819646)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 family protein / eIF-2 family protein Neighboring gene 60S acidic ribosomal protein family Neighboring gene copper ion binding protein Neighboring gene RAB6-interacting golgin (DUF662)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161063.1
NM_001161064.2
NM_001336121.1
NM_128331.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translational elongation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in cytosolic ribosome HDA PubMed 
located_in nucleus HDA PubMed 
located_in peroxisome HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
60S acidic ribosomal protein family
NP_001154535.1
  • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1841 Blast hits to 1840 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 762; Fungi - 418; Plants - 417; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
NP_001154536.1
  • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1851 Blast hits to 1850 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 772; Fungi - 418; Plants - 417; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
NP_180340.1
  • 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1976 Blast hits to 1975 proteins in 364 species: Archae - 32; Bacteria - 0; Metazoa - 785; Fungi - 446; Plants - 440; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11818230..11819646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128331.4 → NP_180340.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180340.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P51407, Q9ZUX3
    UniProtKB/TrEMBL
    A0A178VQE0, A0A178VWL7, A0A5S9X298
    Conserved Domains (1) summary
    cl21508
    Location:1 → 115
    Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...

  2. NM_001336121.1 → NP_001325177.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2C7

  3. NM_001161064.2 → NP_001154536.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154536.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWL7, F4IGR5
    Conserved Domains (1) summary
    cl21508
    Location:1 → 127
    Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...

  4. NM_001161063.1 → NP_001154535.1  60S acidic ribosomal protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154535.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VWL7, F4IGR4
    Conserved Domains (1) summary
    cl21508
    Location:1 → 130
    Ribosomal_P1_P2_L12p; Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P51407.2

Gene LinkOut

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