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NEP-interacting protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817275, updated on 18-Sep-2024

Summary

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Official Full Name
NEP-interacting protein, putative (DUF239)
Primary source
TAIR:AT2G27320
Locus tag
AT2G27320
See related
Araport:AT2G27320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K2.10; F12K2_10
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (11692884..11694916)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene egg cell-secreted-like protein (DUF1278) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein Neighboring gene OTU-like cysteine protease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128291.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NEP-interacting protein, putative (DUF239)
NP_180300.2
  • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G38255.1); Has 682 Blast hits to 653 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 10; Plants - 661; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11692884..11694916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128291.3 → NP_180300.2  NEP-interacting protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180300.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BPS8, Q5XVD5
    Conserved Domains (2) summary
    pfam03080
    Location:122 → 319
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:30 → 105
    DUF4409; Domain of unknown function (DUF4409)
Nucleotide Protein
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