BASS2 Sodium Bile acid symporter family [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: BASS2
Official Full Name: Sodium Bile acid symporter family
Primary source: TAIR:AT2G26900
Locus tag: AT2G26900
See related: Araport:AT2G26900
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: bile acid:sodium symporter family protein 2; F12C20.6; F12C20_6
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Genomic context

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See BASS2 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 13

Sequence:: Chromosome: 2; NC_003071.7 (11474752..11478142, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Orthologues of BASS2 can be detected in all the genomes of land plants that have been characterized so far, thus indicating the widespread importance of sodium-coupled pyruvate import into plastids [BASS2]
Title: A plastidial sodium-dependent pyruvate transporter.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

MASC_STS14621 (e-PCR)
- UniSTS:258731

Homology

Orthologs from OrthoDB

NM_179758.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables pyruvate transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in plasma membrane pyruvate transport	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast envelope	HDA more info	PubMed
located_in chloroplast envelope	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast thylakoid	HDA more info	PubMed

General protein information

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Preferred Names: Sodium Bile acid symporter family

NP_850089.1

Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport, organic anion transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657), Bile acid transporter (InterPro:IPR004710); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT1G78560.1); Has 5023 Blast hits to 5015 proteins in 1109 species: Archae - 92; Bacteria - 2706; Metazoa - 448; Fungi - 4; Plants - 268; Viruses - 0; Other Eukaryotes - 1505 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

11474752..11478142 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_179758.4 → NP_850089.1 Sodium Bile acid symporter family [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850089.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O81017, Q1EBV7, Q84WD8, Q8S2V7

UniProtKB/TrEMBL

A0A178VXV9, A0A5S9X1Q9, A0A7G2E9B8

Conserved Domains (1) summary

COG0385
Location:101 → 405

YfeH; Predicted Na+-dependent transporter [General function prediction only]