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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817220, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT2G26790
Locus tag
AT2G26790
See related
Araport:AT2G26790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12C20.17; F12C20_17
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (11424163..11427792, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene Aldolase superfamily protein Neighboring gene Putative methyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001318293.1
  • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G13800.1); Has 52197 Blast hits to 13814 proteins in 285 species: Archae - 9; Bacteria - 44; Metazoa - 475; Fungi - 643; Plants - 49485; Viruses - 2; Other Eukaryotes - 1539 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11424163..11427792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336084.1 → NP_001318293.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81028
    UniProtKB/TrEMBL
    A0A178VQE9, A0A5S9X1N4
    Conserved Domains (4) summary
    PLN03081
    Location:153 → 521
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    PLN03218
    Location:387 → 668
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:390 → 417
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:708 → 756
    PPR_2; PPR repeat family

  2. NM_128236.2 → NP_180247.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180247.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81028
    UniProtKB/TrEMBL
    A0A178VQE9, A0A5S9X1N4
    Conserved Domains (4) summary
    PLN03081
    Location:153 → 521
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    PLN03218
    Location:387 → 668
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:390 → 417
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:708 → 756
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81028.1

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