U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817083, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Primary source
TAIR:AT2G25450
Locus tag
AT2G25450
See related
Araport:AT2G25450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13B15.11; F13B15_11
Summary
encodes a protein whose sequence is similar to ACC oxidase
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (10829854..10831655, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein Neighboring gene receptor like protein 20 Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein Neighboring gene receptor like protein 21

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis, Hansen BG, et al. Plant Physiol, 2008 Dec. PMID 18945935, Free PMC Article
  2. Analysis of Arabidopsis cDNA that shows homology to the tomato E8 cDNA. Trentmann SM, et al. Plant Mol Biol, 1995 Oct. PMID 7579161
  3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At2g25450 is necessary for the hydroxylation of but-3-enyl glucosinolate to 2-hydroxybut-3-enyl glucosinolate in planta and that this metabolite increases resistance to generalist herbivory.
    Title: A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis,
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_128102.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 1-aminocyclopropane-1-carboxylate oxidase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables 3-butenylglucosinolate 2-hydroxylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 3-butenylglucosinolate 2-hydroxylase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within glucosinolate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of glucosinolate biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NP_180115.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 7865 Blast hits to 7837 proteins in 966 species: Archae - 0; Bacteria - 1060; Metazoa - 82; Fungi - 676; Plants - 4824; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10829854..10831655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128102.6 → NP_180115.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180115.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56WB2, Q9SKK4
    UniProtKB/TrEMBL
    A0A5S9X1B4, A0A654EX74
    Conserved Domains (1) summary
    PLN02947
    Location:20 → 359
    PLN02947; oxidoreductase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SKK4.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools