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TRAF-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817070, updated on 18-Sep-2024

Summary

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Official Full Name
TRAF-like family protein
Primary source
TAIR:AT2G25320
Locus tag
AT2G25320
See related
Araport:AT2G25320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22F11.9; T22F11_9
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (10781622..10788235, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ER membrane protein complex subunit-like protein (DUF2012) Neighboring gene ECA1 gametogenesis related family protein Neighboring gene TRAF-like family protein Neighboring gene vesicle-associated membrane protein 712

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Puncta-localized TRAF domain protein TC1b contributes to the autoimmunity of snc1. Ao K, et al. Plant J, 2023 May. PMID 36799433
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128089.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to oomycetes IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within immune response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRAF-like family protein
NP_180104.3
  • TRAF-like family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25330.1); Has 73652 Blast hits to 40883 proteins in 2342 species: Archae - 900; Bacteria - 9328; Metazoa - 35691; Fungi - 5783; Plants - 4303; Viruses - 204; Other Eukaryotes - 17443 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10781622..10788235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335989.1 → NP_001324607.1  TRAF-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VY62, A0A1P8B0P7, A0A384KF20, A0A654EW12
    Conserved Domains (3) summary
    COG1196
    Location:1361 → 1616
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00121
    Location:404 → 538
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17018
    Location:936 → 1304
    FANC; Fanconi anemia ID complex proteins FANCI and FANCD2

  2. NM_001335988.1 → NP_001324608.1  TRAF-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0P6, A0A654EW12

  3. NM_128089.3 → NP_180104.3  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180104.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EW12, Q0KKQ1
    Conserved Domains (5) summary
    cd00121
    Location:403 → 537
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam06705
    Location:1345 → 1572
    SF-assemblin; SF-assemblin/beta giardin
    pfam10212
    Location:1342 → 1570
    TTKRSYEDQ; Predicted coiled-coil domain-containing protein
    cl12013
    Location:1478 → 1603
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl17018
    Location:935 → 1303
    FANC; Fanconi anemia ID complex proteins FANCI and FANCD2
Nucleotide Protein
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