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Phox1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817067, updated on 18-Sep-2024

Summary

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Official Symbol
Phox1
Official Full Name
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Primary source
TAIR:AT2G25290
Locus tag
AT2G25290
See related
Araport:AT2G25290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22F11.12; T22F11_12
Summary
Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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Genomic context

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See Phox1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (10765702..10768734, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene AmmeMemoRadiSam system protein B Neighboring gene ncRNA Neighboring gene low-molecular-weight cysteine-rich 81 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001161062.2
NM_001202670.1
NM_001335984.1
NM_128086.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables myosin XI tail binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
NP_001154534.1
  • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1); Has 5029 Blast hits to 4404 proteins in 327 species: Archae - 25; Bacteria - 208; Metazoa - 2228; Fungi - 709; Plants - 1135; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
NP_001189599.1
  • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1).
NP_180101.4
  • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1); Has 5029 Blast hits to 4404 proteins in 327 species: Archae - 25; Bacteria - 208; Metazoa - 2228; Fungi - 709; Plants - 1135; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10765702..10768734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161062.2 → NP_001154534.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154534.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IRM4, Q9SIR4
    UniProtKB/TrEMBL
    A0A178VW51, A0A5S9X188
    Conserved Domains (3) summary
    smart00666
    Location:280 → 356
    PB1; PB1 domain
    TIGR00990
    Location:52 → 171
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:52 → 80
    TPR; TPR repeat [structural motif]

  2. NM_128086.6 → NP_180101.4  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180101.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IRM4, Q9SIR4
    UniProtKB/TrEMBL
    A0A178VW51, A0A5S9X188
    Conserved Domains (3) summary
    smart00666
    Location:280 → 356
    PB1; PB1 domain
    TIGR00990
    Location:52 → 171
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:52 → 80
    TPR; TPR repeat [structural motif]

  3. NM_001335984.1 → NP_001323652.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IRM4, Q9SIR4
    UniProtKB/TrEMBL
    A0A178VW51, A0A5S9X188
    Conserved Domains (3) summary
    smart00666
    Location:280 → 356
    PB1; PB1 domain
    TIGR00990
    Location:52 → 171
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:52 → 80
    TPR; TPR repeat [structural motif]

  4. NM_001202670.1 → NP_001189599.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189599.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IRM4, Q9SIR4
    UniProtKB/TrEMBL
    A0A178VW51, A0A5S9X188
    Conserved Domains (3) summary
    smart00666
    Location:280 → 356
    PB1; PB1 domain
    TIGR00990
    Location:52 → 171
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:52 → 80
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IRM4.1

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