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Myb/SANT-like DNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817035, updated on 18-Sep-2024

Summary

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Official Full Name
Myb/SANT-like DNA-binding domain protein
Primary source
TAIR:AT2G24960
Locus tag
AT2G24960
See related
Araport:AT2G24960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27C12.12; F27C12_12
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (10617116..10620034)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF239) Neighboring gene spindle/kinetochore-associated protein Neighboring gene Proline-rich extensin-like family protein Neighboring gene Serine/threonine-protein kinase Rio1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001124909.2
NM_128054.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Myb/SANT-like DNA-binding domain protein
NP_001118381.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_180068.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10617116..10620034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124909.2 → NP_001118381.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118381.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X0Y0, A0A654EXH8, B3H6H6
    Conserved Domains (1) summary
    pfam12776
    Location:327 → 420
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  2. NM_128054.1 → NP_180068.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180068.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVJ6, Q9SK37
    Conserved Domains (1) summary
    pfam12776
    Location:327 → 420
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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