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zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817020, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
Primary source
TAIR:AT2G24830
Locus tag
AT2G24830
See related
Araport:AT2G24830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27C12.25; F27C12_25
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (10576856..10579230, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 55-II Neighboring gene ncRNA Neighboring gene AGAMOUS-like 61 Neighboring gene tyrosine aminotransferase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128042.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
NP_180056.1
  • zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), D111/G-patch (InterPro:IPR000467); Has 706 Blast hits to 687 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 400; Fungi - 113; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10576856..10579230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128042.4 → NP_180056.1  zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180056.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SK49
    UniProtKB/TrEMBL
    A0A178W179
    Conserved Domains (2) summary
    smart00356
    Location:136 → 162
    ZnF_C3H1; zinc finger
    pfam01585
    Location:300 → 343
    G-patch; G-patch domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SK49.1

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