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S-locus glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816998, updated on 18-Sep-2024

Summary

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Official Full Name
S-locus glycoprotein family protein
Primary source
TAIR:AT2G24620
Locus tag
AT2G24620
See related
Araport:AT2G24620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25P17.8; F25P17_8
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (10463076..10463959, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated channel 14 Neighboring gene Defensin-like (DEFL) family protein Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Glycosyl transferase family 2 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128023.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in recognition of pollen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
S-locus glycoprotein family protein
NP_180038.1
  • S-locus glycoprotein family protein; INVOLVED IN: recognition of pollen; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: receptor kinase 1 (TAIR:AT1G65790.1); Has 1616 Blast hits to 1585 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1616; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10463076..10463959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128023.2 → NP_180038.1  S-locus glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180038.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9SJA3
    Conserved Domains (1) summary
    pfam00954
    Location:51 → 154
    S_locus_glycop; S-locus glycoprotein domain
Nucleotide Protein
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