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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816996, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT2G24600
Locus tag
AT2G24600
See related
Araport:AT2G24600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25P17.10; F25P17_10
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (10452034..10454593, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA recognition motif and CCHC-type zinc finger domains containing protein Neighboring gene ncRNA Neighboring gene cyclic nucleotide-gated channel 14 Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128021.3
NM_179724.4
NM_201799.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_001189592.1
  • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1).
NP_565575.1
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 23294 Blast hits to 11989 proteins in 581 species: Archae - 40; Bacteria - 1638; Metazoa - 13006; Fungi - 1656; Plants - 2370; Viruses - 127; Other Eukaryotes - 4457 (source: NCBI BLink).
NP_850055.2
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973528.1
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10452034..10454593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202663.2 → NP_001189592.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189592.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2Q9, F4IPR3
    Conserved Domains (6) summary
    COG0531
    Location:406 → 545
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    cd00204
    Location:66 → 222
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:41 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:171 → 222
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:399 → 506
    PGG; Domain of unknown function
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  2. NM_179724.4 → NP_850055.2  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850055.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2Q9, Q93ZX5, Q9SJA5
    Conserved Domains (5) summary
    cd00204
    Location:66 → 222
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:41 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:171 → 222
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:399 → 486
    PGG; Domain of unknown function
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  3. NM_201799.3 → NP_973528.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973528.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2Q9, F4IPR3
    Conserved Domains (6) summary
    COG0531
    Location:406 → 545
    PotE; Amino acid transporter [Amino acid transport and metabolism]
    cd00204
    Location:66 → 222
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:41 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:171 → 222
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:399 → 506
    PGG; Domain of unknown function
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  4. NM_128021.3 → NP_565575.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565575.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W2Q9, Q93ZX5, Q9SJA5
    Conserved Domains (5) summary
    cd00204
    Location:66 → 222
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:41 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:171 → 222
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:399 → 486
    PGG; Domain of unknown function
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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