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transmembrane protein (DUF788) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816926, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein (DUF788)
Primary source
TAIR:AT2G23940
Locus tag
AT2G23940
See related
Araport:AT2G23940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29E15.14; T29E15_14
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (10183867..10185331)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Putative small nuclear ribonucleoprotein G Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001335874.1
NM_001335875.1
NM_127955.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
transmembrane protein (DUF788)
NP_565558.1
  • Protein of unknown function (DUF788); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT4G30500.1); Has 311 Blast hits to 311 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10183867..10185331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127955.4 → NP_565558.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565558.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
    Conserved Domains (1) summary
    pfam05620
    Location:1 → 163
    DUF788; Protein of unknown function (DUF788)

  2. NM_001335874.1 → NP_001324055.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
    Conserved Domains (1) summary
    pfam05620
    Location:1 → 163
    DUF788; Protein of unknown function (DUF788)

  3. NM_001335875.1 → NP_001324054.1  transmembrane protein (DUF788) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0R4, A0A5S9X0K8, O82222, Q8GYK4, Q8LEX3
    Conserved Domains (1) summary
    pfam05620
    Location:1 → 163
    DUF788; Protein of unknown function (DUF788)
Nucleotide Protein
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