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SNRNP-G Putative small nuclear ribonucleoprotein G [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816925, updated on 18-Sep-2024

Summary

Official Symbol
SNRNP-G
Official Full Name
Putative small nuclear ribonucleoprotein G
Primary source
TAIR:AT2G23930
Locus tag
AT2G23930
See related
Araport:AT2G23930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
probable small nuclear ribonucleoprotein G; T29E15.13; T29E15_13
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Genomic context

See SNRNP-G in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (10182251..10183370)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene transmembrane protein (DUF788) Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001335873.1
NM_127954.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding HDA PubMed 
Process Evidence Code Pubs
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 
located_in vacuole HDA PubMed 

General protein information

Preferred Names
Putative small nuclear ribonucleoprotein G
NP_001318277.1
  • probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1073 Blast hits to 1073 proteins in 252 species: Archae - 104; Bacteria - 0; Metazoa - 399; Fungi - 257; Plants - 180; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
NP_179971.1
  • probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1247 Blast hits to 1247 proteins in 267 species: Archae - 124; Bacteria - 0; Metazoa - 472; Fungi - 280; Plants - 197; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10182251..10183370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127954.3NP_179971.1  Putative small nuclear ribonucleoprotein G [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179971.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82221
    UniProtKB/TrEMBL
    A0A5S9X0K7, A0A654EVJ5
    Conserved Domains (1) summary
    cd01719
    Location:674
    Sm_G; Sm protein G
  2. NM_001335873.1NP_001318277.1  Putative small nuclear ribonucleoprotein G [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V663, A8MSG1