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LBD10 LOB domain-containing protein 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816897, updated on 18-Sep-2024

Summary

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Official Symbol
LBD10
Official Full Name
LOB domain-containing protein 10
Primary source
TAIR:AT2G23660
Locus tag
AT2G23660
See related
Araport:AT2G23660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26B6.31; F26B6_31; LOB domain-containing protein 10
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Genomic context

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See LBD10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (10060065..10061822, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Reticulan like protein B13 Neighboring gene tRNA-Met Neighboring gene ncRNA Neighboring gene homolog of Synechocystis YCF37 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis. Kim MJ, et al. Plant J, 2015 Mar. PMID 25611322
  2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
  3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A combinatorial role of LBD10 with LBD27 is crucial for male gametophyte development in Arabidopsis. LBD10 and LBD27 interact to form a heterodimer for nuclear localization.
    Title: LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001161058.2
NM_001335860.1
NM_127929.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription activator activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LOB domain-containing protein 10
NP_001154530.1
  • LOB domain-containing protein 10 (LBD10); INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_179946.1
  • LOB domain-containing protein 10 (LBD10); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10060065..10061822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127929.3 → NP_179946.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179946.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG56, O64836
    UniProtKB/TrEMBL
    A0A654EVH6
    Conserved Domains (1) summary
    pfam03195
    Location:6 → 103
    DUF260; Protein of unknown function DUF260

  2. NM_001161058.2 → NP_001154530.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154530.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG56, O64836
    UniProtKB/TrEMBL
    A0A654EVH6
    Conserved Domains (1) summary
    pfam03195
    Location:6 → 103
    DUF260; Protein of unknown function DUF260

  3. NM_001335860.1 → NP_001323843.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B7XG56, O64836
    UniProtKB/TrEMBL
    A0A654EVH6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64836.1

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