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WAVH1 Zinc finger (C3HC4-type RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816799, updated on 18-Sep-2024

Summary

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Official Symbol
WAVH1
Official Full Name
Zinc finger (C3HC4-type RING finger) family protein
Primary source
TAIR:AT2G22680
Locus tag
AT2G22680
See related
Araport:AT2G22680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9I22.12; T9I22_12; WAV3 homolog 1
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Genomic context

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See WAVH1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (9645270..9647655)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene indoleacetic acid-induced protein 8 Neighboring gene zinc ion binding protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Sakai T, et al. Plant J, 2012 Apr. PMID 22122664
  2. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Stone SL, et al. Plant Physiol, 2005 Jan. PMID 15644464, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_127833.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in gravitropism IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger (C3HC4-type RING finger) family protein
NP_179853.1
  • Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 1023 Blast hits to 1022 proteins in 225 species: Archae - 2; Bacteria - 267; Metazoa - 133; Fungi - 122; Plants - 361; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9645270..9647655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127833.5 → NP_179853.1  Zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179853.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZQ46
    UniProtKB/TrEMBL
    A0A178VZH1
    Conserved Domains (2) summary
    cd01466
    Location:301 → 461
    vWA_C3HC4_type; VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
    cd16448
    Location:130 → 176
    RING-H2; H2 subclass of RING (RING-H2) finger and its variants
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQ46.1

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