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Rhamnogalacturonate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816793, updated on 18-Sep-2024

Summary

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Official Full Name
Rhamnogalacturonate lyase family protein
Primary source
TAIR:AT2G22620
Locus tag
AT2G22620
See related
Araport:AT2G22620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9I22.6; T9I22_6
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Genomic context

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Location:
chromosome: 2
Exon count:
16
Sequence:
Chromosome: 2; NC_003071.7 (9604772..9610661, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Di-glucose binding protein with Kinesin motor domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene AGAMOUS-like 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202649.1
NM_001335802.1
NM_001335803.1
NM_001335804.1
NM_127827.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables rhamnogalacturonan endolyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rhamnogalacturonate lyase family protein
NP_001189578.1
  • Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1).
NP_179847.1
  • Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in 68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9604772..9610661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127827.4 → NP_179847.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179847.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EWN3, Q9ZQ51
    Conserved Domains (3) summary
    cd10316
    Location:374 → 473
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam06045
    Location:39 → 243
    Rhamnogal_lyase; Rhamnogalacturonate lyase family
    pfam14683
    Location:483 → 671
    CBM-like; Polysaccharide lyase family 4, domain III

  2. NM_001202649.1 → NP_001189578.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189578.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EWN3, F4IJK8
    Conserved Domains (3) summary
    cd10316
    Location:294 → 393
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10320
    Location:61 → 261
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:403 → 591
    CBM-like; Polysaccharide lyase family 4, domain III

  3. NM_001335802.1 → NP_001325395.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EWN3, Q9ZQ51

  4. NM_001335803.1 → NP_001325397.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B357, A0A5S9X083, A0A654EWN3, Q6NKW8

  5. NM_001335804.1 → NP_001325396.1  Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B326
Nucleotide Protein
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