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CHR34 chromatin remodeling 34 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816684, updated on 18-Sep-2024

Summary

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Official Symbol
CHR34
Official Full Name
chromatin remodeling 34
Primary source
TAIR:AT2G21450
Locus tag
AT2G21450
See related
Araport:AT2G21450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chromatin remodeling 34; F3K23.21; F3K23_21
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Genomic context

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See CHR34 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (9179410..9183037, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene IBR domain containing protein Neighboring gene Papain family cysteine protease Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene SNF2 domain CLASSY-like protein Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335754.1
NM_127717.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in gene silencing by siRNA-directed DNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
chromatin remodeling 34
NP_179740.1
  • chromatin remodeling 34 (CHR34); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT2G16390.1); Has 13841 Blast hits to 12186 proteins in 1498 species: Archae - 60; Bacteria - 3626; Metazoa - 3317; Fungi - 3335; Plants - 1269; Viruses - 195; Other Eukaryotes - 2039 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9179410..9183037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335753.1 → NP_001325209.1  chromatin remodeling 34 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNZ8, A0A1P8B2I9

  2. NM_127717.2 → NP_179740.1  chromatin remodeling 34 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179740.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNZ8, Q9SJT3
    Conserved Domains (3) summary
    pfam00176
    Location:268 → 587
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:621 → 738
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:264 → 412
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001335754.1 → NP_001325208.1  chromatin remodeling 34 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNZ8, A0A1P8B2G9
Nucleotide Protein
Heading Accession and Version

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