U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BPC4 basic pentacysteine 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816663, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
BPC4
Official Full Name
basic pentacysteine 4
Primary source
TAIR:AT2G21240
Locus tag
AT2G21240
See related
Araport:AT2G21240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATBPC4; basic pentacysteine 4; BASIC PENTACYSTEINE 4; BBR; F7O24.4; F7O24_4
Summary
Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BPC4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (9101277..9103141, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene ubiquitin fusion degradation 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus. Wanke D, et al. PLoS One, 2011 Feb 10. PMID 21347358, Free PMC Article
  2. Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. Monfared MM, et al. Plant J, 2011 Jun. PMID 21435046
  3. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Meister RJ, et al. Plant J, 2004 Feb. PMID 14731261
  4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_127696.4
NM_179681.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of developmental process IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to ethylene IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
basic pentacysteine 4
NP_565503.1
  • basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_850012.1
  • basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9101277..9103141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127696.4 → NP_565503.1  basic pentacysteine 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565503.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6U1M9, Q8S8C6
    UniProtKB/TrEMBL
    A0A178VSW9, A0A5S9WZV7
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 296
    GAGA_bind; GAGA binding protein-like family

  2. NM_179681.2 → NP_850012.1  basic pentacysteine 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850012.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6U1M9, Q8S8C6
    UniProtKB/TrEMBL
    A0A178VSW9, A0A5S9WZV7
    Conserved Domains (1) summary
    pfam06217
    Location:1 → 296
    GAGA_bind; GAGA binding protein-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S8C6.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools