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transmembrane protein, putative (DUF1279) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816628, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF1279)
Primary source
TAIR:AT2G20940
Locus tag
AT2G20940
See related
Araport:AT2G20940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26H11.30; F26H11_30
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (9002001..9002908, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene chaperone (DUF3353) Neighboring gene uncharacterized protein Neighboring gene SNARE-like superfamily protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene lipid-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335716.1
NM_127664.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
transmembrane protein, putative (DUF1279)
NP_565494.1
  • Protein of unknown function (DUF1279); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 228 Blast hits to 228 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 41; Plants - 76; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9002001..9002908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127664.3 → NP_565494.1  transmembrane protein, putative (DUF1279) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565494.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VV93, A0A384KKL9, A0A5S9WZS5, Q9SKR7
    Conserved Domains (1) summary
    pfam06916
    Location:3 → 114
    DUF1279; Protein of unknown function (DUF1279)

  2. NM_001335716.1 → NP_001324017.1  transmembrane protein, putative (DUF1279) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VV93, A0A384KKL9, A0A5S9WZS5, Q9SKR7
    Conserved Domains (1) summary
    pfam06916
    Location:3 → 114
    DUF1279; Protein of unknown function (DUF1279)
Nucleotide Protein
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