U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PR-1-LIKE pathogenesis-related protein-1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816518, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
PR-1-LIKE
Official Full Name
pathogenesis-related protein-1-like protein
Primary source
TAIR:AT2G19990
Locus tag
AT2G19990
See related
Araport:AT2G19990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
pathogenesis-related protein-1-like; T2G17.21; T2G17_21
Summary
Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PR-1-LIKE in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (8629857..8630688, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene CDC27 family protein Neighboring gene Gls protein (DUF810)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis. Hirosawa Y, et al. Plant Cell Physiol, 2021 Dec 10. PMID 34410430
  2. PRH1 mediates ARF7-LBD dependent auxin signaling to regulate lateral root development in Arabidopsis thaliana. Zhang F, et al. PLoS Genet, 2020 Feb. PMID 32032352, Free PMC Article
  3. Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up? Laird J, et al. Planta, 2004 Oct. PMID 15293050
  4. Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Bove J, et al. Plant Mol Biol, 2008 May. PMID 18278441
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis.
    Title: Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis.
  2. In Arabidopsis thaliana the product of PRH1, a PR-1 homolog annotated previously as encoding a pathogen-responsive protein, was identified as a target of AUXIN RESPONSE FACTOR7 (ARF7)-mediated auxin signaling and as participating in the development of lateral roots. The transcription of PRH1 was controlled by the binding of both ARF7 and LATERAL ORGAN BOUNDARIES DOMAIN (LBD) transcription factors to its promoter region.
    Title: PRH1 mediates ARF7-LBD dependent auxin signaling to regulate lateral root development in Arabidopsis thaliana.
  3. Expression in comparison to At2g14610; recommendation to change the annotation.
    Title: Inappropriate annotation of a key defence marker in Arabidopsis: will the real PR-1 please stand up?
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_127557.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
pathogenesis-related protein-1-like protein
NP_179589.1
  • pathogenesis-related protein-1-like (PR-1-LIKE); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT4G33720.1); Has 3036 Blast hits to 2941 proteins in 366 species: Archae - 0; Bacteria - 64; Metazoa - 1638; Fungi - 337; Plants - 905; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8629857..8630688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127557.3 → NP_179589.1  pathogenesis-related protein-1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179589.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRT6, A0A7G2EBX0, Q39186
    Conserved Domains (1) summary
    cd05381
    Location:42 → 176
    CAP_PR-1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of pathogenesis-related protein 1 (PR-1) family proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools