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SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816498, updated on 18-Sep-2024

Summary

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Official Full Name
SNARE-like superfamily protein
Primary source
TAIR:AT2G19790
Locus tag
AT2G19790
See related
Araport:AT2G19790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F22.18; F6F22_18
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (8527175..8528685)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene profilin 5 Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene ncRNA Neighboring gene myo-inositol oxygenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Endogenous Arabidopsis messenger RNAs transported to distant tissues. Thieme CJ, et al. Nat Plants, 2015 Mar 23. PMID 27247031
  2. The coiled-coil domain of EHD2 mediates inhibition of LeEix2 endocytosis and signaling. Bar M, et al. PLoS One, 2009 Nov 19. PMID 19936242, Free PMC Article
  3. The Adaptor Complex AP-4 Regulates Vacuolar Protein Sorting at the trans-Golgi Network by Interacting with VACUOLAR SORTING RECEPTOR1. Fuji K, et al. Plant Physiol, 2016 Jan. PMID 26546666, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_127537.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-4 adaptor complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SNARE-like superfamily protein
NP_179569.1
  • SNARE-like superfamily protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, protein transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G47830.1); Has 1921 Blast hits to 1920 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 856; Fungi - 405; Plants - 316; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8527175..8528685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127537.4 → NP_179569.1  SNARE-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179569.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82201
    UniProtKB/TrEMBL
    A0A5S9WZJ5, A0A654EVK3
    Conserved Domains (1) summary
    cd14832
    Location:4 → 141
    AP4_sigma; AP-4 complex subunit sigma
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82201.1

Gene LinkOut

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