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zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816457, updated on 18-Sep-2024

Summary

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Official Full Name
zinc ion binding protein
Primary source
TAIR:AT2G19385
Locus tag
AT2G19385
See related
Araport:AT2G19385
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (8386933..8388790)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein (DUF872) Neighboring gene tRNA-splicing ligase, putative (DUF239) Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene serine/arginine repetitive matrix protein Neighboring gene microRNA ath-MIR5632 precursor Neighboring gene AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_127496.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc ion binding protein
NP_565451.1
  • zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 578 Blast hits to 525 proteins in 182 species: Archae - 0; Bacteria - 8; Metazoa - 240; Fungi - 111; Plants - 79; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8386933..8388790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127496.3 → NP_565451.1  zinc ion binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565451.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VT68, A0A5S9WZA2, Q8LFS1, Q8S8S8
    Conserved Domains (3) summary
    COG5246
    Location:97 → 167
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    pfam08790
    Location:30 → 57
    zf-LYAR; LYAR-type C2HC zinc finger
    pfam12874
    Location:95 → 119
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
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