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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816445, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT2G19280
Locus tag
AT2G19280
See related
Araport:AT2G19280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27F23.8; F27F23_8
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (8362387..8366144)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene mitotic checkpoint protein PRCC-carboxy-term protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene HSP20-like chaperones superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202623.2
NM_127485.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001189552.1
  • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1).
NP_179518.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 48105 Blast hits to 13725 proteins in 297 species: Archae - 3; Bacteria - 51; Metazoa - 644; Fungi - 771; Plants - 45193; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8362387..8366144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335630.1 → NP_001325054.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64561, Q6NKW7

  2. NM_001335631.1 → NP_001325053.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64561, Q6NKW7

  3. NM_127485.4 → NP_179518.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179518.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64561, Q6NKW7
    Conserved Domains (4) summary
    TIGR00756
    Location:479 → 513
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:550 → 577
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:613 → 645
    PPR_1; PPR repeat
    pfam13041
    Location:477 → 523
    PPR_2; PPR repeat family

  4. NM_001202623.2 → NP_001189552.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189552.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64561, Q6NKW7
    Conserved Domains (4) summary
    TIGR00756
    Location:479 → 513
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:550 → 577
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:613 → 645
    PPR_1; PPR repeat
    pfam13041
    Location:477 → 523
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NKW7.2

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