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SHT spermidine hydroxycinnamoyl transferase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816424, updated on 18-Sep-2024

Summary

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Official Symbol
SHT
Official Full Name
spermidine hydroxycinnamoyl transferase
Primary source
TAIR:AT2G19070
Locus tag
AT2G19070
See related
Araport:AT2G19070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
spermidine hydroxycinnamoyl transferase; T20K24.8; T20K24_8
Summary
encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)
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Genomic context

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See SHT in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (8260038..8261985, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RALF-like 13 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene metaxin-like protein Neighboring gene DUF630 family protein (DUF630 and DUF632) Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines. Grienenberger E, et al. Plant J, 2009 Apr. PMID 19077165
  2. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, et al. Plant Physiol, 2011 Oct. PMID 21849515, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SHT is specifically expressed in anther tapetum cells in the early stages of flower development, and involved in the synthesis of hydroxycinnamoyl spermidines.
    Title: A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

NM_127464.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables hydroxycinnamoyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables spermidine:caffeoyl CoA N-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables spermidine:coumaroyl CoA N-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables spermidine:feruloyl CoA N-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables spermidine:sinapoyl CoA N-acyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen exine formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within spermidine hydroxycinnamate conjugate biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
spermidine hydroxycinnamoyl transferase
NP_179497.1
  • spermidine hydroxycinnamoyl transferase (SHT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (TAIR:AT5G48930.1); Has 2876 Blast hits to 2852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 2754; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8260038..8261985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127464.2 → NP_179497.1  spermidine hydroxycinnamoyl transferase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179497.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64470
    UniProtKB/TrEMBL
    A0A178VR29, A0A5S9WZC3, A0A7G2ED77
    Conserved Domains (1) summary
    PLN03157
    Location:2 → 451
    PLN03157; spermidine hydroxycinnamoyl transferase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64470.1

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