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VEL2 vernalization5/VIN3-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816404, updated on 18-Sep-2024

Summary

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Official Symbol
VEL2
Official Full Name
vernalization5/VIN3-like protein
Primary source
TAIR:AT2G18880
Locus tag
AT2G18880
See related
Araport:AT2G18880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19F24.8; F19F24_8; vernalization5/VIN3-like; vernalization5/VIN3-like 2; VIL3; VIN3-like 3
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Genomic context

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See VEL2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (8172189..8178995)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene Afadin/alpha-actinin-binding protein Neighboring gene Protein kinase superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. Greb T, et al. Curr Biol, 2007 Jan 9. PMID 17174094
  2. The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5. Kim DH, et al. Proc Natl Acad Sci U S A, 2010 Sep 28. PMID 20837520, Free PMC Article
  3. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Sung S, et al. Genes Dev, 2006 Dec 1. PMID 17114575, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_127444.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellular response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in epigenetic regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
involved_in response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in vernalization response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vernalization5/VIN3-like protein
NP_179478.4
  • vernalization5/VIN3-like (VEL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: vernalization5/VIN3-like (TAIR:AT4G30200.3); Has 278 Blast hits to 186 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8172189..8178995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127444.4 → NP_179478.4  vernalization5/VIN3-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179478.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1DW35, O64618, Q5BPT4, Q84N40
    UniProtKB/TrEMBL
    A0A5S9WZG3, A0A654EU19
    Conserved Domains (2) summary
    smart00060
    Location:316 → 394
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:119 → 239
    PHD_Oberon; PHD - plant homeodomain finger protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BPT4.1

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