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Translation elongation factor EF1A/initiation factor IF2gamma family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816387, updated on 18-Sep-2024

Summary

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Official Full Name
Translation elongation factor EF1A/initiation factor IF2gamma family protein
Primary source
TAIR:AT2G18720
Locus tag
AT2G18720
See related
Araport:AT2G18720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSF3.10; MSF3_10
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (8114785..8117085, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene trehalose phosphatase/synthase 11 Neighboring gene SECY homolog 1 Neighboring gene uncharacterized protein Neighboring gene diacylglycerol kinase 3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Translation elongation factor EF1A/initiation factor IF2gamma family protein
NP_179462.2
  • Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: serine-type peptidase activity, translation factor activity, nucleic acid binding, GTP binding, GTPase activity; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8114785..8117085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127428.2 → NP_179462.2  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179462.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTC3, A0A384LFM7, A0A5S9WZ85, F4IRF5
    Conserved Domains (1) summary
    PTZ00327
    Location:9 → 461
    PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional

  2. NM_001335603.1 → NP_001324883.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTC3, A0A384LFM7, A0A5S9WZ85, F4IRF5
    Conserved Domains (1) summary
    PTZ00327
    Location:9 → 461
    PTZ00327; eukaryotic translation initiation factor 2 gamma subunit; Provisional

  3. NM_001335604.1 → NP_001324884.1  Translation elongation factor EF1A/initiation factor IF2gamma family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1G6, Q9ZV47
Nucleotide Protein
Heading Accession and Version

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