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SCY1 SECY homolog 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816386, updated on 18-Sep-2024

Summary

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Official Symbol
SCY1
Official Full Name
SECY homolog 1
Primary source
TAIR:AT2G18710
Locus tag
AT2G18710
See related
Araport:AT2G18710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SECY homolog 1
Summary
Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid.
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Genomic context

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See SCY1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (8112084..8114485, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene trehalose phosphatase/synthase 11 Neighboring gene Translation elongation factor EF1A/initiation factor IF2gamma family protein Neighboring gene uncharacterized protein Neighboring gene diacylglycerol kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting of SEC translocase SCY components to different membranes in chloroplasts. Singhal R, et al. J Exp Bot, 2017 Nov 2. PMID 28992187, Free PMC Article
  2. The thylakoid membrane protein ALB3 associates with the cpSecY-translocase in Arabidopsis thaliana. Klostermann E, et al. Biochem J, 2002 Dec 15. PMID 12217076, Free PMC Article
  3. Chloroplast SecY is complexed to SecE and involved in the translocation of the 33-kDa but not the 23-kDa subunit of the oxygen-evolving complex. Schuenemann D, et al. J Biol Chem, 1999 Apr 23. PMID 10207046
  4. Identification of Putative Substrates of SEC2, a Chloroplast Inner Envelope Translocase. Li Y, et al. Plant Physiol, 2017 Apr. PMID 28213560, Free PMC Article
  5. In vitro reconstitution of co-translational D1 insertion reveals a role of the cpSec-Alb3 translocase and Vipp1 in photosystem II biogenesis. Walter B, et al. Biochem J, 2015 Jun 1. PMID 25803492

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_127427.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within thylakoid membrane organization ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SECY homolog 1
NP_179461.1
  • SECY homolog 1 (SCY1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G31530.1); Has 9180 Blast hits to 9165 proteins in 2700 species: Archae - 72; Bacteria - 5385; Metazoa - 19; Fungi - 2; Plants - 102; Viruses - 0; Other Eukaryotes - 3600 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8112084..8114485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127427.3 → NP_179461.1  SECY homolog 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179461.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q38885, Q9SLG1
    UniProtKB/TrEMBL
    A0A178VZD7, A0A5S9WZD5, A0A7G2EBL5
    Conserved Domains (1) summary
    PRK09204
    Location:130 → 539
    secY; preprotein translocase subunit SecY; Reviewed
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q38885.2

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