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elongator complex protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816356, updated on 18-Sep-2024

Summary

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Official Full Name
elongator complex protein
Primary source
TAIR:AT2G18410
Locus tag
AT2G18410
See related
Araport:AT2G18410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30D6.8; T30D6_8
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (7990618..7992774)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 20 Neighboring gene ADP-ribosylation factor family protein Neighboring gene ribosomal protein L6 family protein Neighboring gene Gibberellin-regulated family protein Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary Conservation in Protein-Protein Interactions and Structures of the Elongator Sub-Complex ELP456 from Arabidopsis and Yeast. Jun SE, et al. Int J Mol Sci, 2024 Apr 15. PMID 38673955, Free PMC Article
  2. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation. Nelissen H, et al. Proc Natl Acad Sci U S A, 2010 Jan 26. PMID 20080602, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036294.2
NM_127398.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of elongator holoenzyme complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
elongator complex protein
NP_001031371.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_179432.3
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7990618..7992774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127398.5 → NP_179432.3  elongator complex protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179432.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IQJ2, F4IQJ3, Q9ZPX3
    UniProtKB/TrEMBL
    A0A178W1H7, A0A5S9WZC0
    Conserved Domains (1) summary
    pfam10483
    Location:145 → 305
    Elong_Iki1; Elongator subunit Iki1

  2. NM_001036294.2 → NP_001031371.1  elongator complex protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031371.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IQJ2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IQJ2.1

Gene LinkOut

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