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nucleic acid binding / zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816302, updated on 18-Sep-2024

Summary

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Official Full Name
nucleic acid binding / zinc ion binding protein
Primary source
TAIR:AT2G17920
Locus tag
AT2G17920
See related
Araport:AT2G17920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T13L16.6; T13L16_6
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (7782712..7784287)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein Neighboring gene WEB family protein (DUF827)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_127346.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nucleic acid binding / zinc ion binding protein
NP_179382.2
  • nucleic acid binding;zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7782712..7784287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127346.2 → NP_179382.2  nucleic acid binding / zinc ion binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179382.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6DR65, Q84RE2
    Conserved Domains (2) summary
    pfam14111
    Location:34 → 170
    DUF4283; Domain of unknown function (DUF4283)
    pfam14392
    Location:172 → 219
    zf-CCHC_4; Zinc knuckle
Nucleotide Protein
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