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NIP2 NEP-interacting protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816282, updated on 18-Sep-2024

Summary

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Official Symbol
NIP2
Official Full Name
NEP-interacting protein 2
Primary source
TAIR:AT2G17730
Locus tag
AT2G17730
See related
Araport:AT2G17730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
NEP-interacting protein 2; T17A5.9; T17A5_9
Summary
Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
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Genomic context

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See NIP2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (7703805..7705831)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene NEP-interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein. Azevedo J, et al. Proc Natl Acad Sci U S A, 2008 Jul 1. PMID 18567673, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202615.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to light stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
NEP-interacting protein 2
NP_001189544.1
  • NEP-interacting protein 2 (NIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G35840.1).
NP_179364.2
  • NEP-interacting protein 2 (NIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G35840.1); Has 9242 Blast hits to 9216 proteins in 266 species: Archae - 0; Bacteria - 2; Metazoa - 2260; Fungi - 688; Plants - 5081; Viruses - 18; Other Eukaryotes - 1193 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7703805..7705831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127327.4 → NP_179364.2  NEP-interacting protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179364.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GT74, Q8GWW3
    UniProtKB/TrEMBL
    A0A178VVH3, A0A5S9WZ42
    Conserved Domains (2) summary
    cd16454
    Location:196 → 238
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    pfam13441
    Location:56 → 91
    Gly-zipper_YMGG; YMGG-like Gly-zipper

  2. NM_001202615.1 → NP_001189544.1  NEP-interacting protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189544.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4INM3
    Conserved Domains (2) summary
    pfam13436
    Location:56 → 90
    Gly-zipper_OmpA; Glycine-zipper containing OmpA-like membrane domain
    pfam13639
    Location:194 → 231
    zf-RING_2; Ring finger domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GT74.1

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