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F-box SKIP23-like protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816206, updated on 18-Sep-2024

Summary

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Official Full Name
F-box SKIP23-like protein (DUF295)
Primary source
TAIR:AT2G17030
Locus tag
AT2G17030
See related
Araport:AT2G17030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6P23.19; F6P23_19
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (7399056..7400970)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Mechanosensitive ion channel family protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene F-box SKIP23-like protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtSKIP18 and AtSKIP31, F-box subunits of the SCF E3 ubiquitin ligase complex, mediate the degradation of 14-3-3 proteins in Arabidopsis. Hong JP, et al. Biochem Biophys Res Commun, 2017 Mar 25. PMID 28189687
  2. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
  3. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_127256.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box SKIP23-like protein (DUF295)
NP_565401.1
  • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G17036.1); Has 414 Blast hits to 409 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 414; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7399056..7400970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127256.5 → NP_565401.1  F-box SKIP23-like protein (DUF295) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565401.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WRT1, Q3EBZ2
    UniProtKB/TrEMBL
    A0A178W0R3, A0A5S9WYX0, A0A7G2EAN8
    Conserved Domains (1) summary
    PLN03215
    Location:1 → 345
    PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3EBZ2.1

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