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Mechanosensitive ion channel family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816203, updated on 18-Sep-2024

Summary

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Official Full Name
Mechanosensitive ion channel family protein
Primary source
TAIR:AT2G17000
Locus tag
AT2G17000
See related
Araport:AT2G17000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6P23.16; F6P23_16
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (7388893..7392302, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Major facilitator superfamily protein Neighboring gene Mechanosensitive ion channel family protein Neighboring gene F-box/RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
Mechanosensitive ion channel family protein
NP_179292.1
  • Mechanosensitive ion channel family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 6 (TAIR:AT1G78610.1); Has 1986 Blast hits to 1976 proteins in 685 species: Archae - 66; Bacteria - 1304; Metazoa - 0; Fungi - 206; Plants - 211; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7388893..7392302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127253.1 → NP_179292.1  Mechanosensitive ion channel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179292.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IME1
    UniProtKB/TrEMBL
    A0A5S9WYV5
    Conserved Domains (2) summary
    COG0668
    Location:639 → 839
    MscS; Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]
    pfam00924
    Location:639 → 809
    MS_channel; Mechanosensitive ion channel

  2. NM_001335526.1 → NP_001325106.1  Mechanosensitive ion channel family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B261, A0A5S9WYV5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IME1.1

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