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GCIP-interacting family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816187, updated on 18-Sep-2024

Summary

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Official Full Name
GCIP-interacting family protein
Primary source
TAIR:AT2G16860
Locus tag
AT2G16860
See related
Araport:AT2G16860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12A24.4; F12A24_4
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (7303812..7306675, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene plasma membrane intrinsic protein 2;8 Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001335493.1
NM_127239.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GCIP-interacting family protein
NP_565396.1
  • GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7303812..7306675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127239.4 → NP_565396.1  GCIP-interacting family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565396.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUR4, A0A384L2X5, A0A5S9WYU9, Q9ZVX7
    Conserved Domains (1) summary
    pfam08231
    Location:143 → 291
    SYF2; SYF2 splicing factor

  2. NM_001335493.1 → NP_001324839.1  GCIP-interacting family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUR4, A0A384L2X5, A0A5S9WYU9, Q9ZVX7
    Conserved Domains (1) summary
    pfam08231
    Location:143 → 291
    SYF2; SYF2 splicing factor
Nucleotide Protein
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