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F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816182, updated on 18-Sep-2024

Summary

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Official Full Name
F-box and associated interaction domains-containing protein
Primary source
TAIR:AT2G16810
Locus tag
AT2G16810
See related
Araport:AT2G16810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24I21.22; T24I21_22
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (7287412..7288945, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene high-affinity nickel-transport family protein Neighboring gene pseudo Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. F-box proteins in Arabidopsis. Xiao W, et al. Trends Plant Sci, 2000 Nov. PMID 11077244
  2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_127233.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box and associated interaction domains-containing protein
NP_565395.2
  • F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G40910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7287412..7288945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127233.2 → NP_565395.2  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565395.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84X43, Q9SLD8
    UniProtKB/TrEMBL
    A0A178VPI8
    Conserved Domains (3) summary
    smart00256
    Location:41 → 81
    FBOX; A Receptor for Ubiquitination Targets
    TIGR01640
    Location:138 → 273
    F_box_assoc_1; F-box protein interaction domain
    cl23987
    Location:243 → 276
    FBA_1; F-box associated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84X43.1

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