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Transcriptional factor B3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816118, updated on 18-Sep-2024

Summary

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Official Full Name
Transcriptional factor B3 family protein
Primary source
TAIR:AT2G16210
Locus tag
AT2G16210
See related
Araport:AT2G16210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7H1.23; F7H1_23; REM24; reproductive meristem 24
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (7026761..7029175, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene structural molecule Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene EMBRYO SURROUNDING FACTOR-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_127178.3
NM_201742.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcriptional factor B3 family protein
NP_179217.2
  • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973471.1
  • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT5G09780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7026761..7029175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127178.3 → NP_179217.2  Transcriptional factor B3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179217.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5BPT7, Q84RE7, Q84RE8, Q9XIG9
    UniProtKB/TrEMBL
    A0A178VWE0, A0A5S9WYD0
    Conserved Domains (1) summary
    smart01019
    Location:19 → 112
    B3; B3 DNA binding domain

  2. NM_201742.1 → NP_973471.1  Transcriptional factor B3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973471.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5BPT7
    Conserved Domains (1) summary
    smart01019
    Location:19 → 112
    B3; B3 DNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BPT7.1

Gene LinkOut

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