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Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816039, updated on 18-Sep-2024

Summary

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Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT2G15470
Locus tag
AT2G15470
See related
Araport:AT2G15470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26H6.16
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (6754330..6756051)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene UDP-glucosyl transferase 73B5 Neighboring gene UDP-glycosyltransferase 73B4 Neighboring gene RNA-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_179149.2
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    6754330..6756051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127107.2 → NP_179149.2  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179149.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IIG2, Q9ZQG5
    Conserved Domains (2) summary
    pfam00295
    Location:65 → 389
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:7 → 402
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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