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Glycosyl hydrolase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815957, updated on 18-Sep-2024

Summary

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Official Full Name
Glycosyl hydrolase superfamily protein
Primary source
TAIR:AT2G14690
Locus tag
AT2G14690
See related
Araport:AT2G14690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXYN4; T6B13.7; T6B13_7
Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (6283801..6286055, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sucrose-proton symporter 8 Neighboring gene myosin heavy chain-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Suzuki M, et al. Plant Cell Physiol, 2002 Jul. PMID 12154138
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_127033.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables endo-1,4-beta-xylanase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Glycosyl hydrolase superfamily protein
NP_179076.3
  • Glycosyl hydrolase superfamily protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G33820.1); Has 1960 Blast hits to 1953 proteins in 427 species: Archae - 8; Bacteria - 1140; Metazoa - 20; Fungi - 345; Plants - 268; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    6283801..6286055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127033.4 → NP_179076.3  Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179076.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q680B7, Q6NQ91, Q9ZVK8
    UniProtKB/TrEMBL
    A0A178VRY1, A0A5S9WYC9
    Conserved Domains (1) summary
    smart00633
    Location:241 → 491
    Glyco_10; Glycosyl hydrolase family 10
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q680B7.1

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